| Title | Journal |
| Biophysical reviews top five: atomic force microscopy in biophysics | Biophysical Reviews |
Reconstruction of Three-Dimensional Conformations of Bacterial
ClpB from High-Speed Atomic-Force-Microscopy Images | Frontiers in Molecular
Biosciences |
A facile combinatorial approach to construct a ratiometric fluorescent
sensor: application for the real-time sensing of cellular pH changes | Chemical Science |
DNA Nanotechnology to Disclose Molecular Events at the Nanoscale
and Mesoscale Levels | Springer Nature |
| Quantitative description of a contractile macromolecular machine | Science Advances |
Dynamic Assembly/Disassembly of Staphylococcus aureus FtsZ
Visualized by High-Speed Atomic Force Microscopy | International Journal of
Molecular Sciences 2021, Vol. 22, Page 1697 |
| Localization atomic force microscopy | Nature 2021 594:7863 |
Movements of mycoplasma mobile gliding machinery detected by
high-speed atomic force microscopy | mBio |
An ultra-wide scanner for large-area high-speed atomic force
microscopy with megapixel resolution | Scientific Reports 2021 11:1 |
A molecularly engineered, broad-spectrum anti-coronavirus lectin
inhibits SARS-CoV-2 and MERS-CoV infection in vivo | Research Square |
Influenza virus ribonucleoprotein complex formation occurs in the
nucleolus | bioRxiv |
Tardigrade Secretory-Abundant Heat-Soluble Protein Has a Flexible
β-Barrel Structure in Solution and Keeps This Structure in
Dehydration | Journal of Physical Chemistry B |
Ultrastructure of influenza virus ribonucleoprotein complexes during
viral RNA synthesis | Communications Biology on |
A facile combinatorial approach to construct a ratiometric fluorescent
sensor: application for the real-time sensing of cellular pH changes | Chemical Science |
Deformation of microtubules regulates translocation dynamics of
kinesin | Science Advances |
Unraveling the host-selective toxic interaction of cassiicolin with lipid
membranes and its cytotoxicity | bioRxiv |
Nanostructure and thermoresponsiveness of poly( N -isopropyl
methacrylamide)-based hydrogel microspheres prepared via aqueous free radical precipitation polymerization | RSC Advances |
JRAB/MICAL-L2 undergoes liquid–liquid phase separation to form
tubular recycling endosomes | Communications Biology 2021
4:1 |
Correlation of membrane protein conformational and functional
dynamics | Nature Communications 2021
12:1 |
Non-close-packed arrangement of soft elastomer microspheres on
solid substrates | RSC Advances |
| Folding RNA–Protein Complex into Designed Nanostructures | Methods in Molecular Biology |
| A glutamine sensor that directly activates TORC1 | Communications Biology 2021
4:1 |
Architecture of zero-latency ultrafast amplitude detector for high-
speed atomic force microscopy | Applied Physics Letters |
Correlative AFM and fluorescence imaging demonstrate nanoscale
membrane remodeling and ring-like and tubular structure formation by septins | Nanoscale |
Desiccation-induced fibrous condensation of CAHS protein from an
anhydrobiotic tardigrade | bioRxiv |
Construction of ferritin hydrogels utilizing subunit–subunit
interactions | PLOS ONE |
Monomeric α-synuclein (αS) inhibits amyloidogenesis of human
prion protein (hPrP) by forming a stable αS-hPrP hetero-dimer. | Prion |
| Influence of protein adsorption on aggregation in prefilled syringes | Journal of Pharmaceutical
Sciences |
Dynamic mechanisms of CRISPR interference by Escherichia coli
CRISPR-Cas3 | bioRxiv |
An RNA Triangle with Six Ribozyme Units Can Promote a Trans-
Splicing Reaction through Trimerization of Unit Ribozyme Dimers | Applied Sciences |
Faster high-speed atomic force microscopy for imaging of
biomolecular processes Review of Scientific Instruments ARTICLE scitation.org/journal/rsi Faster high-speed atomic force microscopy for imaging of biomolecular processes | Rev. Sci. Instrum |
Title: Identification of lectin receptors for conserved SARS-CoV-2
glycosylation sites | bioRxiv |
Structural and dynamics analysis of intrinsically disordered proteins
by high-speed atomic force microscopy | Nature Nanotechnology |
Millisecond Conformational Dynamics of Skeletal Myosin II Power
Stroke Studied by High-Speed Atomic Force Microscopy | ACS Nano |
High-Speed Atomic Force Microscopy Reveals Spatiotemporal
Dynamics of Histone Protein H2A Involution by DNA Inchworming | The Journal of Physical
Chemistry Letters |
Nanostructures, Thermoresponsiveness, and Assembly Mechanism
of Hydrogel Microspheres during Aqueous Free-Radical Precipitation Polymerization | Langmuir |
Chained structure of dimeric F 1-like ATPase in Mycoplasma mobile
gliding machinery 4 | bioRxiv |
Lipid Membrane Interaction of Peptide/DNA Complexes Designed for
Gene Delivery | Langmuir |
| High-Speed Atomic Force Microscopy to Study Myosin Motility | Advances in Experimental
Medicine and Biology |
Single-molecule level dynamic observation of disassembly of the
apo-ferritin cage in solution | Physical Chemistry Chemical
Physics |
Atomic Force Microscopy of Biomembranes : A Tool for Studying the
Dynamic Behavior of Membrane Proteins | New Techniques for Studying
Biomembranes |
Adenosine leakage from perforin-burst extracellular vesicles inhibits
perforin secretion by cytotoxic T-lymphocytes | PLOS ONE |
High-Speed Atomic Force Microscopy Reveals the Structural
Dynamics of the Amyloid-β and Amylin Aggregation Pathways | International Journal of
Molecular Sciences 2020, Vol. 21, Page 4287 |
Molecular mechanism of the recognition of bacterially cleaved
immunoglobulin by the immune regulatory receptor LILRA2 | Journal of Biological Chemistry |
| Biological physics by high-speed atomic force microscopy | Philosophical Transactions of
the Royal Society A: Mathematical, Physical and Engineering Sciences |
Viral RNA recognition by LGP2 and MDA5, and activation of signaling
through step-by-step conformational changes | Nucleic Acids Research |
Key Nucleation Stages and Associated Molecular Determinants and
Processes in pH-Induced Formation of Amyloid Beta Oligomers as Revealed by High-Speed AFM | bioRxiv |
Novel Babesia bovis _ exported proteins that modify properties of
infected red blood cells | PLoS Pathogens |
DNA origami demonstrate the unique stimulatory power of single
pMHCs as T-cell antigens | Proceedings of the National
Academy of Sciences |
Structural insights into the mechanism of rhodopsin
phosphodiesterase | Nature Communications |
Structural insights into the mechanism of rhodopsin
phosphodiesterase | Nature Communications |
High-Speed AFM Reveals Molecular Dynamics of Human Influenza A
Hemagglutinin and Its Interaction with Exosomes | Nano Letters |
| DNA Ring Motif with Flexible Joints | Micromachines |
| Nanopores: a versatile tool to study protein dynamics | Essays in Biochemistry |
Geometrical Characterization of Glass Nanopipettes with Sub-10 nm
Pore Diameter by Transmission Electron Microscopy | Analytical Chemistry |
Carbon nanotube porin diffusion in mixed composition supported
lipid bilayers | Scientific Reports |
| One-Step Calibration of AFM in Liquid | Frontiers in Physics |
| Nanoscale interaction of RecG with mobile fork DNA | Nanoscale Advances |
Convergent evolution of processivity in bacterial and fungal
cellulases | Proceedings of the National
Academy of Sciences |
Convergent evolution of processivity in bacterial and fungal
cellulases | Proceedings of the National
Academy of Sciences of the United States of America |
Interaction of the motor protein SecA and the bacterial protein
translocation channel SecYEG in the absence of ATP | Nanoscale Advances |
| Nanoreporter of an Enzymatic Suicide Inactivation Pathway | Nano Letters |
High-speed atomic force microscopy highlights new molecular
mechanism of daptomycin action | Nature Communications |
Direct visualization of the conformational change of FUS/TLS upon
binding to promoter-associated non-coding RNA | Chemical Communications |
Thermoresponsive Micellar Assembly Constructed from a Hexameric
Hemoprotein Modified with Poly(N-isopropylacrylamide) toward an Artificial Light-Harvesting System | Journal of the American
Chemical Society |
Schizorhodopsins: A family of rhodopsins from Asgard archaea that
function as light-driven inward H + pumps | Science Advances |
Two-State Exchange Dynamics in Membrane-Embedded
Oligosaccharyltransferase Observed in Real-Time by High-Speed AFM | Journal of Molecular Biology |
Thermoresponsive structural changes of single poly(N-isopropyl
acrylamide) hydrogel microspheres under densely packed conditions on a solid substrate | Polymer Journal |
High-Speed Atomic Force Microscopy Reveals Factors Affecting the
Processivity of Chitinases during Interfacial Enzymatic Hydrolysis of Crystalline Chitin | ACS Catalysis |
Rad50 zinc hook functions as a constitutive dimerization module
interchangeable with SMC hinge | Nature Communications |
Assembly mechanism of a supramolecular MS-ring complex to
initiate bacterial flagellar biogenesis in vibrio species | Journal of Bacteriology |
Structural Dynamics of a Protein Domain Relevant to the Water-
Oxidizing Complex in Photosystem II as Visualized by High-Speed Atomic Force Microscopy | Journal of Physical Chemistry B |
Recent advances in bioimaging with high-speed atomic force
microscopy | Biophysical Reviews |
Dynamic behavior of an artificial protein needle contacting a
membrane observed by high-speed atomic force microscopy | Nanoscale |
Enhanced enzymatic activity exerted by a packed assembly of a
single type of enzyme | Chemical Science |
High Speed AFM and NanoInfrared Spectroscopy Investigation of A
β1–42 Peptide Variants and Their Interaction With
POPC/SM/Chol/GM1 Model Membranes | Frontiers in Molecular
Biosciences |
| The hierarchical assembly of septins revealed by high-speed AFM | Nature Communications |
| Millisecond dynamics of an unlabeled amino acid transporter | Nature Communications |
Atg9 is a lipid scramblase that mediates autophagosomal membrane
expansion | Nature Structural & Molecular
Biology |
A Simplified Cluster Analysis of Electron Track Structure for
Estimating Complex DNA Damage Yields | International Journal of
Molecular Sciences |
Supramolecular tholos-like architecture constituted by archaeal
proteins without functional annotation | Scientific Reports |
| Studies on the impellers generating force in muscle | Biophysical Reviews |
Diversity of physical properties of bacterial extracellular membrane
vesicles revealed through atomic force microscopy phase imaging | Nanoscale |
High-Speed AFM Reveals Molecular Dynamics of Human Influenza A
Hemagglutinin and Its Interaction with Exosomes | Nano Letters |
DNA density-dependent uptake of DNA origami-based two-or three-
dimensional nanostructures by immune cells | Nanoscale |
Spatiotemporally tracking of nano-biofilaments inside the nuclear
pore complex core | Biomaterials |
High-speed atomic force microscopy directly visualizes
conformational dynamics of the HIV Vif protein in complex with three host proteins | Journal of Biological Chemistry |
Self- and Cross-Seeding on α-Synuclein Fibril Growth Kinetics and
Structure Observed by High-Speed Atomic Force Microscopy | ACS Nano |
Liquidity Is a Critical Determinant for Selective Autophagy of Protein
Condensates | Molecular Cell |
Capturing transient antibody conformations with DNA origami
epitopes | Nature Communications |
| Biophysics in Kanazawa University | Biophysical Reviews |
Dynamics of oligomer and amyloid fibril formation by yeast prion
Sup35 observed by high-speed atomic force microscopy | Proceedings of the National
Academy of Sciences |
Annexin-V stabilizes membrane defects by inducing lipid phase
transition | Nature Communications |
Structure and mechanism of bactericidal mammalian perforin-2, an
ancient agent of innate immunity | Science Advances |
Atomic Force Microscopy Visualizes Mobility of Photosynthetic
Proteins in Grana Thylakoid Membranes | Biophysical Journal |
Construction of a Hexameric Hemoprotein Sheet and Direct
Observation of Dynamic Processes of Its Formation | Chemistry Letters |
Single-molecule imaging analysis reveals the mechanism of a high-
catalytic-activity mutant of chitinase A from Serratia marcescens | Journal of Biological Chemistry |
Direct observation and analysis of TET-mediated oxidation
processes in a DNA origami nanochip | Nucleic Acids Research |
On-membrane dynamic interplay between anti-GM1 IgG antibodies
and complement component C1q | International Journal of
Molecular Sciences |
Zwitterionic Polypeptides: Chemoenzymatic Synthesis and Loosening
Function for Cellulose Crystals | Biomacromolecules |
